At E8.0-E8.5, Sp8 is strongly expressed in the anterior neural ridge (Figure 1a). At stage E9.5, Sp8 mRNA is apparent in the entire forebrain anlage in a rostral-ventral/high, caudal-dorsal/low gradient. Additionally, Sp8 transcripts were detected in the olfactory placode (Figure 1b; data not shown). After E10.5, cortical Sp8 mRNA levels decrease, although keeping the typical mediolateral expression gradient in cortical progenitors (Additional data file 1). During later developmental stages, Sp8 transcription is further down-regulated within the cortical ventricular zone (VZ), but remains strongly evident throughout adulthood in the septum (SE), dLGE and olfactory system 15 (data not shown). To gain more insights into the role of Sp8 during forebrain development, we generated mice with a floxed Sp8 locus. Sp8 floxed mice were crossed with mice expressing the Cre-recombinase under the control of the Foxg1 promoter 16 (Additional data file 1) and the floxed allele was bred to homozygozity (termed cKO).

Homozygous Sp8 mutants died at birth. Mutant E10.5 forebrains lacked detectable levels of Sp8 mRNA (Figure 1d). At midgestation cKO embryos showed strong craniofacial abnormalities (data not shown). Nissl-stained histological sections revealed that cKO embryos displayed a dysgenesis of the olfactory bulbs (data not shown) and SE, including an almost complete absence of the midline (15% penetrance, n = 25) that resulted in a mild rostral holoprosencephaly (Figure 1e, e', e''; Additional data file 2). In addition, the thickness of the cortical plate of the cKO cortex was reduced (Figure 1g, g'; 63.5% ± 5.1% of control, n = 10). The basal ganglia consisted of a single eminence (Additional data file 2) with a barely discernable constriction between the LGE and MGE. Corticofugal fiber tracts did not cross the midline and instead formed probst bundles (Figure 1e, e', e''). Caudally, neuronal fibers formed bundles between the internal and external capsules (arrows in Figure 1f, f', f'').

The loss of Sp8 activity in the forebrain provokes structural perturbations of the SE and MGE and prompted us to look for molecular markers associated with forebrain patterning. Whole mount in situ hybridization (WMISH) at E9.5 (after the initiation of Cre activity 16) revealed that the mean expression levels of Pax6 and Emx2 are, conversely, down- and up-regulated in cKO (Figure 2c, c', d, d') compared to wild-type embryos. Importantly, the activity of both Fgf8 and Shh seemed unchanged in the absence of Sp8 (Figure 2a, a', e, e'). Remarkably, Nkx2.1 mRNA 17 was reduced in cKO. Rostrally, the septum anlage was free of Nkx2.1 transcripts (red arrow in Figure 2b, b'), and the caudal portion of the MGE anlage was devoid of Nkx2.1 activity (white arrow in Figure 2b, b'). At E10.5, Fgf8 mRNA was evident in the telencephalic midline, including the septum anlage (Figure 2f, f'). Interestingly, at E12.5, we found that the Fgf8 expression domain in the SE of the mutants was specifically lost (Figure 2g, g'), while the expression of Shh 47 appeared to be unaffected (data not shown). This suggests that Sp8 function might be required for the maintenance of the late expression of Fgf8 in the telencephalic midline.

Next, we examined the patterning of the expression interface at the border of the pallium/subpallium in the medial telencephalic wall, designated medial pallial-subpallial boundary (mPSB). At the mPSB, both the Emx2+ and Pax6+ expression domains were expanded ventrally (arrows in Figure 3c, c', d, d'). Similarly, the Pax6 target gene 18, Ngn2, displayed ectopic expression in the presumptive territory of the SE (Figure 3e, e'). In accordance with the reported inhibition of the ventral marker Mash1 by Ngn2 19, the Mash1+ territory at the mPSB was reduced in cKO (Figure 3j, j'). A similar down-regulation of the expression of the ventral markers Gsh2 202122 and Dlx1 23 (arrows in Figure 3h, h', g, g') was also evident in the dorsal SE. At E15.5, the Ngn2 expression domain was still massively enlarged in the medial telencephalic wall, and thus, the expression domain of Dlx1 remained severely shrunken (Figure 3l, l', m, m'). Intriguingly, despite the partially preserved expression domain of Nkx2.1 in the presumptive MGE territory at E9, examination of E12.5 and E15.5 mutant embryos revealed that Nkx2.1 expression was almost absent from the subpallium (Figure 3f, f', n, n'). The only exception was a small stripe in the putative caudal ganglionic eminence (data not shown). Furthermore, the Nkx6.2+ domain that normally marks the MGE/LGE junction 5 was shifted medially and reached the ventrally expanded Emx2+, Pax6+, and Ngn2+ midline territories in cKO (Figure 3k, k' ; see also Figure 3c, c', d, d', e, e'). Given the loss of substantial parts of the MGE during embryonic development, where the neuronal progenitors mainly generate interneurons 17, cKO cortices contained a strongly reduced amount of Gad67+ interneurons at E18.5+ (20.3 ± 2.7% of wild type, n = 3; Figure 3o, o'). Our analysis further indicated that the expression boundaries of Pax6 (Figure 3b, b'), Ngn2 (Figure 3e, e'), Dlx1 (Figure 3g, g'), Mash1 (Figure 3j, j'), and Gsh2 (Figure 3h, h') at the lateral pallial-subpallial boundary (PSB) were not altered in Sp8-deficient brains. This demonstrates that the molecular identity of the lateral pallium and LGE 17202122 is not affected by the absence of Sp8. In contrast, our data are consistent with a role for Sp8 in the D/V patterning in the medial telencephalic wall.

To study whether the Sp8 mutation might affect pattern formation through the Wnt signaling pathway 8, we examined the expression of Wnt3a, Wnt5a and Wnt7b in the cortical hem and the Wnt antagonist Sfrp2 in the antihem. No change in the expression of these markers was apparent (data not shown). We concluded that Sp8 might act downstream or independently of Wnt signaling 5710.

In the embryonic brain, Sp8 and Emx2 show similar expression characteristics along the medial-lateral axis (high at caudomedial levels and low at rostrolateral levels; Figure 3; Additional data file 1). Interestingly, the pallial Emx2 gradient is clearly up-regulated in mutant embryos at E12 (arrow in Figures 3a, a' and 4a, a'). Conversely, Pax6 normally displays an expression gradient that is high in the rostrolateral and low in the caudomedial pallium, opposing that of Emx2. These two genes mutually control their activities in the cortical neuroepithelium 1. In accordance with the enhanced expression level of Emx2, Pax6 mRNA is clearly reduced in cKO (arrow in Figure 3b, b' ; Figure 4b, b'). Given the crucial roles played by Emx2 and Pax6 in the arealization of the neocortex 123102425, their altered expression in Sp8 mutants prompted us to analyze cortical arealization. The expression of the EphA7 receptor and the EphrinA5 ligand specifically demarcates the regions of the motor/visual and somatosensory cortex, respectively 2426. In the cKO, the EphrinA5 somatosensory domain extends rostrally (Figure 4c, c'). Accordingly, the motor cortex area, which normally expresses EphA7 at high levels, shrinks (Figure 4d, d'). A similar alteration was observed for the characteristic expression of Coup-TF1, normally showing a prominent caudal/high to rostral/low expression gradient 2127. In Sp8 mutants the strong caudal expression domain of Coup-TF1 expanded much more rostrally, reaching the presumptive motor cortex (arrows in Figure 4e, e'). A caudalization of the molecular properties along the A/P axis of the cortex was also evident, when ID-2 expression was examined. High ID-2 levels in upper cortical layers (arrowhead in Figure 4f) of the motor cortex and in layer V in the caudal cortex normally highlight the border between the motor and somatosensory domains 23 (red arrow in Figure 4f). In Sp8 mutants the caudal ID-2 expression territory extends ectopically into the rostral cortex. Additionally, in the presumptive motor cortex, ID-2 expression in upper cortical layers was abolished (Figure 4f').

To study whether the observed molecular caudalization of the Sp8cKO cortex reflects alterations of the cortical area identity, we performed retrograde labeling of thalamocortical (TCA) projections by placing crystals of the lypophilic dies DiI (red) and DiO (green) in the presumptive visual cortex or somatosensory area, respectively (insets in Figure 4g, g'). In controls, the red dye was exclusively present in cells within the dorsal lateral geniculate nucleus (dLGE; dorsal from the dashed line in Figure 4g), while the DiO labels (in green) cells in the ventroposterior complex (VP; ventral from the dashed line in Figure 4g). In the Sp8KO brain, the dLGE was labeled by TCA projections coming from both visual and somatosenory cortex (Figure 4g'). These results suggest that the molecular caudalization of the Sp8KO cortex causes a partial change in the cortical area identity (somatosensory to visual fate).

To elucidate whether the regulation of Emx2 by Sp8 might be direct or indirect, we performed biochemical in vitro experiments. Glutathione S-transferase (GST)-pull down assays revealed that truncated Emx2 protein, lacking the homeobox, does not interact with GST-Sp8 or GST-Sp8 without zinc fingers (Figure 4h, lanes 3 and 4). However, we found that GST-Sp8 as well as GST-Sp8 lacking zinc fingers are able to bind the full-length Emx2 protein in vitro (Figure 4h, lanes 7 and 8). Taken together, this indicates that the Sp8 expression gradient in cortical progenitors plays an important role in the correct positioning of distinct cortical domains along the A/P axis of the developing cortex by modulating the expression level of Emx2. Furthermore, our findings support the idea of a direct interaction between Sp8 and Emx2 proteins.

The hypoplasia provoked in the forebrain of cKO led us to speculate that this may be related to defects in cell proliferation and/or apoptosis 2829. Such alterations were additionally observed in Foxg1 knockout mice 30. However, Foxg1 activity was not affected in Sp8 mutants (data not shown). We therefore determined the bromodeoxyuridine (BrdU) labeling index (BrdU pulse), M-Phase index (pH3 staining), and cell cycle exit 3031 (BrdU/iododeoxyuridine (IdU) double labeling) parameters in the forebrain of cKO at E12.5. None of these parameters were significantly altered in mutant forebrains (Additional data file 3). Furthermore, neither ectopic mitosis nor premature differentiation seems to occur in cKO (Additional data file 3). However, using a TUNEL assay at E12.5, we detected a dramatic increase of apoptosis in forebrain sections (Figure 5a, a'). TUNEL+ cells were found randomly distributed in the dorsal and basal telencephalon (Figure 5a, a', b, b' ; data not shown). The apoptotic cells formed clusters consisting of three to six individual nuclei (arrow in Figure 5c). Counting of TUNEL+ cells on E10.5, E15.5 and E18.5 sections revealed that the Sp8-deficient forebrains contained six times more apoptotic cells at E10.5 and three times more from E12.5 to E18.5 compared to controls (Figure 5e). TUNEL+ nuclei were found in putative proliferative regions (white arrows in Figure 5d) and in the cortical plate proper (CP; blue arrow in Figure 5d). Sp8 deficiency possibly affects the survival of some post-mitotic neurons (Figure 5d; 78.4% TUNEL+/Tuj- at E15.5, n = 2), but mainly early (E10.5-E12.5) neuronal progenitors. Thus, the forebrain hypoplasia in cKO appears as a consequence of the apoptosis-induced loss of progenitors.

We next wanted to know whether the observed loss of progenitors might affect the generation of specifically early- or late-born cortical neurons 32. By injecting BrdU at E12.5 or E15.5 and sampling at E18.5, we created specimens that had BrdU exclusively incorporated in early- (E12.5) or late-born (E15.5) neurons. Analysis of the samples injected at E12.5 identified cells populating deep and intermediate positions of the CP (Figure 5f). In accordance with the detected apoptosis, the number of BrdU+ nuclei in mutant brains was reduced (Figure 5f' ; 64.7 ± 7.8% of wild type, n = 3), pointing to a diminished progenitor pool. Cells labeled with BrdU at E15.5 populated mainly deep compartments (VZ, subventricular zone (SVZ), intermediate zone (IZ)) of the cortex of both genotypes (Figure 5g, g'). However, the amount of BrdU+ cells within the putative SVZ, which were recently shown to generate exclusively upper cortical layers 333435, appeared reduced in the mutants (yellow arrow in Figure 5g'). Conversely, more BrdU-labeled cells were detected in superficial positions in the CP (white arrow in Figure 5g'), most probably reflecting the reduction in the distance from the ventricular to the marginal zone in the mutant cortex.

The apoptotic cell death detected in the forebrain of Sp8 mutant embryos may also affect neurogenesis and early cortical layer development. The cortical preplate (PPL) consists of early-born (E10-E11.5) neurons of pallial origin. Later-born neurons will progressively split this domain into the marginal zone (MZ), CP and subplate (SP) 3637. We used the Tbr1 riboprobe to label early PPL and SP populations 3839 at mid-gestation. While in controls Tbr1+ SP cells are well separated from Tbr1+ CP cells (Figure 6a), this does not occur in cKO embryos (Figure 6a').

Furthermore, we used a cell labeling approach consisting of injecting BrdU at E11 to label SP cells 3640 and then harvesting tissue after a visible separation of SP and CP at E15 (Figure 6a). In addition, the co-detection of BrdU and Tbr1 enabled us to follow the laminar position of the double positive cells, which in controls were found in the SP (arrow in Figure 6b). In contrast, in cKO these cells were located in virtually the most superficial part of the cortical plate (compare Figure 6b, b'). We conclude that proper PPL splitting does not occur in Sp8cKO.

In accordance with defective SP formation 37383940, Gap43 antibody staining revealed that the subcortical connectivity and the axonal wiring appeared abnormal in mutants. In contrast to controls, Gap43+ fibers in Sp8 mutants formed aberrant bundles within the internal capsule, with some axons projecting ectopically towards the MZ (arrows and arrowheads in Figure 6d, d') and basal telencephalon (Additional data file 2 (d, d'')).

Because the detected PPL defect may provoke additional abnormalities, we investigated whether the generation of infra-/supragranular layers and the differentiation of specific neuronal layers were altered in cKO. We therefore labeled late-born/upper cortical neurons with the Cux2 riboprobe 3435, combined with immunolabeling for Tbr1, tracing early-born/deep layer neurons 41. We could not observe co-localization (Figure 7a, a') of both markers, demonstrating that the basic laminar organization of the cortex and the switch from early to late neuronal fate is not altered in mutants. To examine whether Sp8 might be required for the specification of distinct cortical neuron subtypes, we assayed layer-specific marker genes at E18.5. Recent findings 3641 indicate that Tbr1 activity is able to promote the specification of the SP and layer VI. In accordance with defective preplate splitting and the apoptotic cell death of progenitors in cKO, the analysis of Tbr1 expression by immunohistochemistry or in situ hybridization revealed ectopic Tbr1+ cells in the uppermost region of the CP (arrows in Figure 7l'), and a less thick band corresponding to layer VI of the deep CP (Figure 7k, k'). In addition, ER81 was used to trace a subpopulation of layer V neurons 42, but we could not detect ER81 mRNA in CP neurons at E18.5 (Figure 7j, j'). However, the expression of another marker of layer V neurons (Robo1 42) appeared to be only diminished in cKO (Figure 7h, h'), suggesting that only a subset of lower cortical layers might not be correctly specified.

The orphan nuclear receptor RzR-β was utilized to follow layer IV genesis 42. At E18.5, RzR-β transcripts were completely missing in the CP of mutants (compare Figure 7f, f'). Moreover, the expression of Cux proteins in SVZ progenitors was recently shown to promote the fate specification of late-born neurons 3435. Accordingly, we found that in the mutant, although Cux2 expression was reduced (Figure 7d, d'), Cux1 mRNA could not be detected at E18.5 (Figure 7c, c'). Along the same line of evidence, the expression of an additional upper layer neuron marker, Lhx2, is also highly down-regulated in the cortical plate of Sp8 mutants (Figure 7e, e'). This suggests that a reduction in the generation of late-born/upper cortical layer neurons occurs. We assayed Tbr2 immmunoreactivity. Tbr2 is a specific marker for basal/SVZ progenitors 43, which predominantly generate the upper cortical layers 3435. In Sp8 mutants, the population of Tbr2+ (basal) progenitors was significantly reduced at E18.5 (49.4 ± 4.3% of controls, n = 3; Figure 7g, g'). This is consistent with a diminished pool of late progenitors, resulting in a diminished generation of upper cortical layer neurons in conditional Sp8 mutants.

The MZ mostly consists of Reelin+ Cajal-Retzius cells 1937. Using in situ hybridization (ISH) for Reelin mRNA (and a Reelin antibody for quantification) we found more Reelin+ neurons in cKO than in control littermates (142.2 ± 6.4% of controls; Figures 6c, c' and 7b, b'). In summary, these findings support the idea that the lack of Sp8 function during early neurogenesis is responsible for a severe depletion of the early and the late cortical progenitor pool, resulting in a misspecification of distinct cortical neuron subtypes, such as Cux1+, Lhx2+, RzR-β+, and ER81+ lineages.

One morphologically apparent defect was the dysgenesis of the septum. On the molecular level, this might result from the ventral expansion of Emx2, Pax6 and Ngn2 expression territories. As a consequence, the expression of several ventral markers, such as Fgf8, Mash1, Dlx1, and most importantly, Nkx2.1 is regionally down-regulated or completely abolished. Interestingly, Shh and Wnt expression seems to be preserved in the mutant, suggesting that the observed perturbation is independent of these signaling pathways. Our findings suggest that Sp8 might have a critical role in the maintenance of gene activity at the mPSB, since early marker expression is not affected. Interestingly, both Sp8 and Fgf8 are expressed in the septum anlage at early developmental stages. Recent findings demonstrate that FGF signaling is acting downstream of Shh to propagate ventral telencephalic cell types and to promote their survival 6. Our study reveals that, while preserved in the midline and septum anlage until E10.5, the expression of Fgf8 (in the septum) and Nkx2.1 (in the septum and rostral MGE) is completely abolished at E12.5. Moreover, a recent report provides evidence that Fgf8 may regulate Nkx2.1 expression, interfering with the axial patterning of the telencephalon 7, therefore suggesting that the midline defect in cKO could be mediated through Fgf8.

It was recently found that Sp8 is down-regulated in the medial telencephalon of Fgf8 hypomorphic and conditional mutants 7. Strikingly, it was demonstrated by three independent studies that Sp8 might positively regulate Fgf8 expression in the mouse AER 1213, and in the zebrafish pectoral fin 44. Conversely, the loss of Sp8 in the MHB provokes an expansion of the Fgf8 expression domain 14. Therefore, an attractive interpretation of the defect at the medial wall might be that a context-dependent bidirectional interaction between Fgf8 and Sp8 is responsible for the correct patterning of the ventro-medial telencephalon. Recently, FGF signaling was shown to be crucial for the genesis of the SE 45. In the absence of late Fgf8 activity in Sp8cKO, the septal territory abnormally expresses dorsal markers, and therefore, might acquire pallial properties (Figure 8), supporting the idea that Fgf8 and Sp8 may also be required for sustaining ventral cellular identity of septal precursors.

Although Sp8 is expressed in the dLGE, the patterning at the PSB is not disturbed. Two possibilities might be envisioned: first, the D/V patterning at the PSB is established before E9, 5; and second, functional redundancy may exist between Sp8 and the closely related transcription factor Sp9 44 in the ventral telencephalon (Additional data file 1).

We recently have shown that Sp8 knockout mice display a patterning defect at the MHB 14. In the present study we demonstrate that, in addition to its role in the formation of a normal mPSB, Sp8 is necessary for the molecular arealization of the cerebral cortex along the A/P axis. The arealization of the early cortical primordium is dependent on the regionalized expression of ligands belonging to the FGF, WNT/BMP and epidermal growth factor signaling pathways, produced by the anterior neural ridge (ANR), cortical hem, roof plate and antihem, respectively 13. Such ligands are assumed to control the graded expression of transcription factors, encoding positional pattern, and specific for distinct cortical fields. So far, only a few regionally enriched transcription factors have been shown to be critical for this process. For instance, in mice where either Pax6 or Emx2 is not functional, the corresponding rostral and caudal cortical regions, where these genes display highest expression, appear malformed and cortical areas are displaced in opposite directions 246.

Our findings suggest that the inactivation of Sp8 in the forebrain causes a prominent caudalization of the molecular properties of the cortical neuroepithelium, as highlighted by the ectopic rostral expansion of the expression domains of the regionally enriched marker genes Coup-TF1, EphrinA5 and EphA7. Furthermore, Sp8cKO cortices show an enhanced Emx2 and a reciprocally down-regulated Pax6 expression gradient. This supports the notion that the genetic interplay between Pax6 and Emx2 is controlling the establishment of their normal expression gradients 47. However, the loss of Emx2 or Pax6 function does not affect the expression of Sp8, suggesting that Sp8 acts upstream of these genes (Additional data file 1).

FGF signaling from the ANR plays a crucial role in the patterning along the cortical A/P axis 1. Evidence has been presented that Emx2 might indirectly control cortical arealization, through the regulation of Fgf8 10. Recent data, however, challenged such a view by demonstrating that Emx2 may operate directly, and independent of, Fgf8 to specify cortical areas 25. In addition, it was shown that thalamocortical connectivity is affected only in the absence of proper Emx2 function 48, and conversely does not change in Fgf8 hypomorphic cortices in vivo 11. In good agreement with these findings we observe defects in thalamocortical projections in Sp8cKO cortices. Notably, the early FGF signaling from the ANR does not seem to be affected in the Sp8cKO forebrain until at least E10.5. Taken together, our findings strongly suggest leading roles for Emx2 and Sp8 in cortical arealization.

In agreement with findings in Drosophila, we show a direct interaction between Sp8 and Emx2 proteins in vitro, indicating a conservation of this regulatory pathway 49.

Enhanced apoptosis was detected in the limbs 13 and basal telencephalon in Sp8 loss-of-function mice 15. We show here that the forebrain hypoplasia in Sp8cKO mice is primarily due to cell death, affecting both early and late progenitor pools of dorsal and ventral telencephalon.

We further found that when the function of Sp8 is abolished, the preplate splitting is defective, and the MZ contains more Reelin+ cells 50, possibly due to the enhanced Emx2 expression in the mutant cortex. The basic lamination of the cortex is not compromised in cKO. However, the specification of particular neuronal subtypes (such as ER81-, RzR-β-, and Cux1-positive) is affected. Similarly, conditional ablation of Sp8 in the basal telencephalon results in misspecification of a subset of interneurons 15.

Animal treatment and housing was in agreement with the regulations of LAVES (Landesamt für Verbraucherschutz und Lebensmittelsicherheit) in Oldenburg. The different alleles of Sp8 are represented in Additional data file 1. Exons are indicated by black boxes, LoxP sites by black triangles and FRT (Flip recombination target) sites by white triangles. The LoxP-FRT-PGKneo-FRT cassette was inserted 5' to exon 1 and the second LoxP site 3' to exon 3. Southern blot analysis, using probes A, B and C (Figure 1b) identified recombinant clones. Hybridization with probe D (Additional data file 1) confirmed the deletion of the wild-type Sp8 allele. Homozygous Sp8 floxed mice were maintained on a C57/BL6 background. Conditional Sp8 knockout animals were generated by mating Sp8 floxed mice with Foxg1-Cre mice 16 (cKO). Cre activity was monitored using R26R reporter mice 51. Cre+ cells were traced in triple transgenic mice, obtained by crossing Sp8 floxed heterozygous mice (positive for the Cre recombinase) with R26R mice (cKO-R26R).

Genotyping was done by PCR using the following primers: Sp8 (1: CCA-ATG-GGA-GGA-AAA-CAC-ACC-CCC-TCT-TAC-TCC-TC, 2: CCA-GCT-TCC-TGG-ACT-CTT-TCA-GTA-TAG-TTT-TGA-AG, 3: GCG-TGC-AAT-CCA-TCT-TGT-TCA-ATG-GCC-GAT-C); Cre (creF: ATG-CTT-CTG-TCC-GTT-TGC-CG, creR: CCT-GTT-TTG-CAC-GTT-CAC-CG); β-galactosidase (lacZF: TTG-GCG-TAA-GTG-AAG-CGA-C, lacZR: AGC-GGC-TGA-TGT-TGA-ACT-G).

Pregnancy of mated mice was determined by the appearance of the vaginal plug and defined as day E0.5. Staging of embryos was done according to the plug date. Mice were killed by cervical dislocation. Embryos or tissues were dissected, washed in cold phosphate-buffered saline (PBS) and fixed in 4% PFA/PBS (paraformaldehyde) for several hours overnight. After rinsing in PBS, tissues were processed for standard paraffin- or cryo-embedding. Tissues were cryo-protected by overnight incubation in 30% sucrose/PBS at 4°C. Embedding was done in tissue tec (Jung, Nussloch, Germany) and freezing on dry ice. For whole mount ISH, dissected embryos were processed through a methanol series and kept at -20°C.

Immunohistochemistry was performed on 18 μm cryosections, or paraffin embedded sections of 5 μm to 10 μm thickness. Antigens were generally unmasked by boiling in citrate buffer (Vector, Burlingame, CA, USA), as described elsewhere. Primary antibodies were μ-Pax6 (Babco, Richmond, CA, USA), μ-Gap43, μ-Tuj (Covance, Berkeley, CA, USA), μ-BrdU, μ-phospho-HistoneH3 (Abcam, Cambridge, UK), μ-BrdU/IdU (Caltag, Burlingame, CA, USA), μ-Tbr1+2 (gift from R Hevner), and μ-Reelin (gift from A Goffinet). Paraffin sections were dewaxed, rehydrated and rinsed in PBS. Cryosections were washed in PBS and postfixed in 4% PFA/PBS. After unmasking, sections were blocked in a solution containing PBT (PBS + 0.1% TritonX) and 10% FCS (fetal calf serum) for 30 minutes. Primary antibodies were incubated overnight at 4°C in blocking solution. Secondary antibodies were diluted 1:500 in blocking solution and incubated for 1–2 hours at room temperature. Secondary antibodies were Alexa594- or Alexa488-conjugated and raised against mouse-, rabbit- or rat antigens (Molecular Probes, Karlsruhe, Germany). Before mounting, sections were rinsed three times in PBT and sealed with Vectashield mounting medium, containing DAPI as nuclear counterstain (Vector).

X-Gal staining was performed on whole mount tissue or 18 μm cryosections. β-Galactosidase activity was developed in staining solution (PBS, 1 mg/ml X-Gal, 2 mM MgCl₂, 0.01% SDS, 0.02% NP40, 5 mM K₃Fe(CN)₆, 5 mM K₄Fe(CN)₆) for several hours overnight at 37°C. Specimens were then washed in PBS and postfixed in PFA. Sections were counterstained in a solution containing 0.1% neutral red.

ISH on 12 μm to 18 μm cryosections and whole mount ISH were performed using digoxygenin labeled riboprobes, as described previously 1314. Histological analysis was done on nissl stained or neutral red counterstained sections, following standard procedures.

E18.5 brains were fixed in PFA overnight and dissected from the skull. After hemi-sectioning the brains with a blade, crystals of DiI and DiO (Molecular Probes) were placed into multiple, but comparable, locations of the cortex 1148 across genotypes (n = 6 hemi-sections per genotype and experiment). The diffusion of the tracers was allowed to proceed for 4 weeks in PFA at 37°C. After embedding the brains in 5% LMP-Agarose, 100 μm coronal sections were cut on a vibratome and counterstained with DAPI containing mounting medium (Vector).

BrdU and IdU (Sigma, Seelze, Germany) uptake experiments were done by intraperitoneal injection (50 μg/g body weight) of nucleotides into pregnant mice. For pulse labeling, injected mice were sacrificed 30 minutes after injection. Tissues of BrdU-injected embryos were processed for paraffin embedding. Subsequently, 5–10 μm sections were used for immunohistochemistry.

The S-Phase labeling index was estimated by dividing DAPI+ from BrdU+ cells on complete forebrain sections. For fate mapping purposes, BrdU was injected at varying time points from E10.5 to E15.5. Tissues were dissected on E15.5 to E18.5, respectively. The cell cycle length was estimated by sequential BrdU/IdU injection, according to 3031. The (cell cycle) leaving fraction was counted by dividing IdU+/BrdU+ cells from IdU+ only cells on forebrain sections.

TUNEL assay was performed on 5 μm paraffin sections of E10, E12, E15 and E18 brains using a ApopTag Red In Situ Apoptosis Detection kit (Chemicon, Hampshire, UK) and following the manufacturer's advice. The amount of TUNEL+ cells in control specimens of every stage was defined as 100%. Apoptotic cell clusters were identified in cKO from E12.5 to E18.5 and counted as one apoptotic cell.

The cDNA encoding Sp8 (Sp8FL, AA 1–486) and Sp8 lacking zinc fingers (Sp8ΔZn, AA 1–355) were amplified by PCR (MGI-Clone 2443471) using the following PCR primers, adding 5' BamHI and 3' EcoRI restriction sites: Sp8FL forward and Sp8ΔZn forward, G CGC GGA TCC ATG CTT GCT GCT ACC TGT AAT AAG ATC; Sp8FL reverse, G CGC GAA TTC CTC CAG GCC GTT GCG GTG; Sp8ΔZn reverse, G CGC GAA TTC CAG CCC TTT GCG ACG CAG GC. PCR products were then subcloned in frame into the BamHI and EcoRI restriction sites of the pGEX-4T-3 expression vector (Promega, Madison, WI, USA). GST and GST-Sp8 fusion proteins were expressed in Escherichia coli and purified following standard protocols. Equal amounts of GST-Sp8 proteins or GST were incubated with gluthathione-sepharose beads (Amersham, Piscataway, NJ, USA) and washed in PBS.

The cDNA encoding Emx2 (Emx2FL, AA 1–253) and Emx2 lacking the homeobox (Emx2ΔHox, AA 1–144) were amplified by PCR using the following PCR primers, adding 5' EcoRI and 3' NotI restriction sites: Emx2FL forward and Emx2ΔHox forward, G CGC GAA TTC ATG TTT CAG CCG GCG CC; Emx2FL reverse, GCG CGC GGC CGC ATC GTC TGA GGT CAC ATC; Emx2ΔHox reverse, GCG CGC GGC CGC GCC AGG GGT AGA AGG TGG ACG. Template DNA containing the Emx2 open reading frame was kindly provided by A Mallamaci. Amplified PCR products were then subcloned into the EcoRI and NotI restriction sites of the pCMV-TNT vector (Promega). [³⁵S]-methionine labeling of Emx2 proteins was performed using the TNT Quick Coupled Transcription/Translation system (Promega).

The GST and GST-Sp8 bound beads were then incubated with [³⁵S]-methionine-labeled Emx2 protein isoforms in 0.4 ml binding buffer (0.1 M NaCl, 0.01% NP-40). After incubation for 2 hours at 4°C, beads were washed five times in 400 μl binding buffer and then boiled in 40 μl of 10 × SDS-PAGE loading buffer (10% SDS, 10 mM β-mercaptoethanol, 20% glycerol, 0.2 M Tris-HCl, pH 6.8, 0.05% bromophenolblue). Solubilized proteins were separated by 15% SDS-PAGE and the radiolabeled proteins visualized by autoradiography.

Statistics were calculated with Microsoft Excel. Quantifications always represent the mean values of tested specimens. Analysis included error bars and the mean deviation. The total sample number is indicated in the corresponding figure legends or text sections. The different parameters were counted on captured images. Images were processed with Adobe Photoshop 7.0.